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Name: DNA DataBank of Japan (DDBJ)
Keywords: nucleotide sequence, genome, dna, dna database, dna research, nucleotide, phylogenetics, protein, sequence, protein binding, gene expression, gene, genetics, nucleoid, genomics, protein binding, gold standard, bio.tools, FASEB list

Resource Name

DNA DataBank of Japan (DDBJ)

RRID:SCR_002359 RRID Copied

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DNA DataBank of Japan (DDBJ) (RRID:SCR_002359)

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Resource Information

URL: http://www.ddbj.nig.ac.jp

Proper Citation: DNA DataBank of Japan (DDBJ) (RRID:SCR_002359)

Description: Maintains and provides archival, retrieval and analytical resources for biological information. Central DDBJ resource consists of public, open-access nucleotide sequence databases including raw sequence reads, assembly information and functional annotation. Database content is exchanged with EBI and NCBI within the framework of the International Nucleotide Sequence Database Collaboration (INSDC). In 2011, DDBJ launched two new resources: DDBJ Omics Archive and BioProject. DOR is archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between the ArrayExpress at EBI and DOR in the common MAGE-TAB format. BioProject provides organizational framework to access metadata about research projects and data from projects that are deposited into different databases.

Abbreviations: DDBJ

Synonyms: DNA DataBank of Japan (DDBJ), DNA DataBank of Japan, DDBJ, DNA Data Bank of Japan, DDBJ - DNA Data Bank of Japan

Resource Type: data or information resource, data repository, database, service resource, storage service resource

Defining Citation: PMID:26578571, PMID:25477381

Keywords: nucleotide sequence, genome, dna, dna database, dna research, nucleotide, phylogenetics, protein, sequence, protein binding, gene expression, gene, genetics, nucleoid, genomics, protein binding, gold standard, bio.tools, FASEB list

Funding: Japanese Ministry of Education Culture Sports Science and Technology MEXT

Availability: Free, Freely available,

Resource Name: DNA DataBank of Japan (DDBJ)

Resource ID: SCR_002359

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This resource

is recommended by	NIDDK Information Network (dkNET)
is recommended by	National Library of Medicine
is recommended by	NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by	OMICtools
is listed by	re3data.org
is listed by	Debian
is listed by	bio.tools
is related to	INSDC
is related to	GenBank
is related to	INSDC
is related to	European Nucleotide Archive (ENA)
is related to	GenBank
is related to	Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to	Worldwide Protein Data Bank (wwPDB)
is related to	Biological Magnetic Resonance Data Bank (BMRB)
is related to	PDBe - Protein Data Bank in Europe
is related to	PDBe - Protein Data Bank in Europe
is related to	European Nucleotide Archive (ENA)
is related to	Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to	NCBI Assembly Archive Viewer
has parent organization	National Institute of Genetics; Shizuoka; Japan
is parent organization of	DDBJ Omics Archive
is parent organization of	BodyMap-Xs
is parent organization of	DDBJ Sequence Read Archive
is parent organization of	CIBEX: Center for Information Biology gene EXpression database
is parent organization of	Japanese Genotype-phenotype Archive (JGA)

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Data and Source Information

Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400

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