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URL: http://www.glycosciences.de/tools/glyvicinity/
Proper Citation: GlyVicinity (RRID:SCR_001567)
Description: Service to generate statistics about the amino acids present in the vicinity of carbohydrate residues. Besides the amino acids in sequential neighborhood of glycosylation sites (analysed by GlySeq), those in the spatial vicinity of carbohydrate residues determine the characteristics of glycoproteins. The latter ones are of special interest for the examination of carbohydrate-binding proteins. Since carbohydrate moieties are not covalently bound in these cases, sequence analysis comparable to that for glycosylation sites is not possible there. GlyVicinity performs statistical analyses on the types of amino acids around carbohydrate chains and on the atoms forming the closest contacts between protein and carbohydrate residues. Results are based on weekly updated datasets derived from the Protein Data Bank (PDB).
Abbreviations: GlyVicinity
Synonyms: GlyVicinity: Analysis of Amino Acids in the Vicinity of Carbohydrate Residues contained in the Protein Data Bank (PDB)
Resource Type: data or information resource, analysis service resource, service resource, production service resource, data set, data analysis service
Defining Citation: PMID:15608187
Keywords: carbohydrate, amino acid, carbohydrate residue, statistical analysis
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Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) |
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