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URL: http://www.isi.edu/projects/bioscholar/overview
Proper Citation: Bioscholar (RRID:SCR_001380)
Description: Knowledge management and engineering system software for experimental biomedical scientists permitting a single scientific worker (at the level of a graduate student or postdoctoral worker) to design, construct and manage a shared knowledge repository for a research group derived on a local store of PDF files. Usability is especially emphasized within a laboratory so that this software could provide support to experimental scientists attempting to construct a personalized representation of their own knowledge on a medium scale. The BioScholar system uses a graphical interface to create experimental designs based on the experimental variables in the system. The design is then analyzed to construct a tabular input form based on the data flow. They call this methodology "Knowledge Engineering from Experimental Design" or "KEfED". The approach is domain-independent but domain-specific modules reasoning can be constructed to generate interpretations from the observational data represented in the KEfED model. The application is available for download as platform-specific installers including Linux, Unix, Mac OS, and Windows. The installer will install an application that will run the BioScholar server. This server uses Jetty as its integrated web server.
Abbreviations: BioScholar
Resource Type: software application, source code, software resource
Defining Citation: PMID:21859449
Keywords: knowledge engineering from experimental design, protocol, lab data management, knowledge engineering, kefed, experimental design, curate, model, scientific experiment, data repository, experimental variable, biomedical, bioinformatics
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