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URL: https://github.com/grenaud/SAFARI
Proper Citation: SAFARI (RRID:SCR_026028)
Description: C++ software program for alignment of ancient DNA to a pangenome reference graph. Used to recover more alignments from ancient DNA samples, which suffer from characteristic substitution patterns due to chemical damage.
Abbreviations: SAFARI
Synonyms: Sensitive Alignments from a RYmer Index
Resource Type: software application, software resource, source code
Defining Citation: PMID:39415996
Keywords: Pangenomics, ancient DNA, alignment, recover alignments from ancient DNA samples, characteristic substitution patterns, chemical damage,
Funding: NHGRI R01HG010485; NHGRI U01HG010961; NHGRI U41HG010972; Novo Nordisk Data Science Investigator
Availability: Free, Available for download, Freely available,
Resource Name: SAFARI
Resource ID: SCR_026028
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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