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URL: https://github.com/broadinstitute/ichorCNA
Proper Citation: ichorCNA (RRID:SCR_024768)
Description: Software tool that quantifies tumor content in cfDNA from 0.1× coverage whole-genome sequencing data without prior knowledge of tumor mutations. Used to simultaneously segment genome, predict large scale copy number alterations, and estimate tumor fraction of ultra low pass whole genome sequencing sample.
Resource Type: simulation software, software application, software resource
Defining Citation: PMID:29109393
Keywords: quantify tumor content, simultaneously segment genome, predict large scale copy number alterations, estimate tumor fraction, ultra low pass whole genome sequencing sample,
Funding: Canadian Institutes for Health Research Postdoctoral Fellowship ; Gerstner Family Foundation ; NCI P30 CA14051
Availability: Free, Available for download, Freely available
Resource Name: ichorCNA
Resource ID: SCR_024768
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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