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Resource Name

SvABA

RRID:SCR_022998 RRID Copied

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SvABA (RRID:SCR_022998)

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Resource Information

URL: https://github.com/walaj/svaba

Proper Citation: SvABA (RRID:SCR_022998)

Description: Software tool for detecting structural variants in sequencing data using genome wide local assembly. Genome wide detection of structural variants and indels by local assembly. Used for detecting SVs from short read sequencing data using genome wide local assembly with low memory and computing requirements.

Resource Type: data analysis software, data processing software, sequence analysis software, software application, software resource

Defining Citation: PMID:29535149

Keywords: genome wide detection, structural variants, indels, local assembly

Funding: Broad Institute ; DFCI-Novartis Drug Discovery Program ; NCI R01CA188228; NCI U54CA143798; NHGRI T32 HG002295; Pediatric Low-Grade Astrocytoma Foundation ; Voices Against Brain Cancer ; Wellcome Fund Career Award for Medical Scientists

Availability: Free, Available for download, Freely available

Resource Name: SvABA

Resource ID: SCR_022998

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Usage and Citation Metrics

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Data and Source Information

Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400

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