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Resource Summary Report New Search

Resource Name

Short Read Sequence Typing for Bacterial Pathogens

RRID:SCR_015870 RRID Copied

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Short Read Sequence Typing for Bacterial Pathogens (RRID:SCR_015870)

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Resource Information

URL: https://github.com/katholt/srst2

Proper Citation: Short Read Sequence Typing for Bacterial Pathogens (RRID:SCR_015870)

Description: Software that is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Abbreviations: SRST2

Synonyms: SRST2: Short Read Sequence Typing for Bacterial Pathogens, Short Read Sequence Typing v2

Resource Type: sequence analysis software, source code, software resource, data analysis software, software application, data processing software

Defining Citation: PMID:25422674

Keywords: genotype analysis, illumina sequence data, mlst database, gene sequence, st, reference gene, short read

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Related Condition: infectious disease

Funding: NHMRC of Australia 1043830; NHMRC of Australia 1061409; NHMRC of Australia 1061435; Victorian Life Sciences Computation Initiative (VLSCI) VR0082

Availability: Free, Available for download

Resource Name: Short Read Sequence Typing for Bacterial Pathogens

Resource ID: SCR_015870

Alternate IDs: OMICS_12777

Alternate URLs: http://katholt.github.io/srst2/, https://sources.debian.org/src/srst2/

Old URLs: http://srst.sourceforge.net/

License: New BSD 3-clause License

License URLs: https://github.com/katholt/srst2/blob/master/LICENSE.txt

Record Creation Time: 2022-01-29 12:03:27

Record Last Update: 2025-05-20 11:16:27

This resource

uses	Bowtie
uses	SAMTOOLS
is listed by	Debian
is listed by	OMICtools
requires	SciPy
requires	Python Programming Language

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