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Resource Name

Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)

RRID:SCR_008621 RRID Copied

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Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD) (RRID:SCR_008621)

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Resource Information

URL: http://gump.qimr.edu.au/general/daleN/SNPSpD/

Proper Citation: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD) (RRID:SCR_008621)

Description: SNPSpD is a method of correcting for non-independance of single nucleotide polymorphisms (SNPs) in linkage disequilibrium (LD) with each other, on the basis of the spectral decomposition (SpD) of matrices of LD between SNP''s. Additionally, output from SNPSpD includes eigenvalues, principal-component coefficients, and factor loadings after varimax rotation, enabling the selection of a subset of SNPs that optimize the information in a genomic region.

Abbreviations: SNPSpD

Synonyms: Single Nucleotide Polymorphism Spectral Decomposition

Resource Type: production service resource, data analysis service, analysis service resource, service resource

Defining Citation: PMID:14997420

Keywords: bio.tools

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Funding: National Health and MRC Australia 241916

Resource Name: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)

Resource ID: SCR_008621

Alternate IDs: biotools:snpspd, nif-0000-31985

Alternate URLs: https://bio.tools/snpspd

Old URLs: http://genepi.qimr.edu.au/general/daleN/SNPSp

Record Creation Time: 2022-01-29 12:02:48

Record Last Update: 2025-04-23 11:50:01

This resource

is listed by	Debian
is listed by	bio.tools
has parent organization	Queensland Institute of Medical Research

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