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URL: http://services.nbic.nl/copub/portal/
Proper Citation: CoPub (RRID:SCR_005327)
Description: Text mining tool that detects co-occuring biomedical concepts in abstracts from the MedLine literature database. It allows batch input of multiple human, mouse or rat genes and produces lists of keywords from several biomedical thesauri that are significantly correlated with the set of input genes. These lists link to Medline abstracts in which the co-occurring input genes and correlated keywords are highlighted. Furthermore, CoPub can graphically visualize differentially expressed genes and over-represented keywords in a network, providing detailed insight in the relationships between genes and keywords, and revealing the most influential genes as highly connected hubs.
Abbreviations: CoPub
Resource Type: data access protocol, web service, service resource, software resource
Defining Citation: PMID:18442992
Keywords: microarray, gene, literature, enrich, annotate, network, database, differential expression, bio.tools
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