Neuroscience Information Framework

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Neurodatabase Tutorial


For up to date issues or problems with this database please see the wiki.
For more information, please visit the BrainML Data Server at Neurodatabase.org.


Neurodatabase.org is a repository of electrophysiological data, mainly single and multiple unit activity experiments are stored. 

To access the data starting at a recording location is useful.  Below we have typed in visual cortex.


Image 1


The query yields results from multiple databases, but under dataset, we find Neurodatabase.  The fields visible to the NIF are the study name, subject, description of the study, the protocol, recording area, and location.


Image 2a

Clicking on the blue link, leads to the LNI neurodatabase site, where additional information about each dataset is stored as well as the link to download the entire dataset (see download link under the Results section) or any of its components.


Image 3


Scrolling down reveals the experimental components, which can be downloaded or viewed from the website by clicking on the word (view). 


Image 4


Clicking on (view) opens a java program that displays the timing of spikes in the experiment.

Image 5


For more information, please visit the BrainML Data Server at Neurodatabase.org.

Last updated: Friday, 30-Jul-2010 22:02:53 PDT

For general information, contact us at support@neuinfo.org


Principal Investigators:
Maryann Martone
maryann@ncmir.ucsd.edu

Amarnath Gupta
gupta@sdsc.edu


Jeffrey S. Grethe
jgrethe@ncmir.ucsd.edu

Project Manager:
Ashraf Memon
amemon@sdsc.edu
Curation:
Anita Bandrowski
abandrowski@ucsd.edu
External Relations/Web Support:
Lee G. Hornbrook
lee@ncmir.ucsd.edu